STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptlc1Serine palmitoyltransferase, long chain base subunit 1. (479 aa)    
Predicted Functional Partners:
kdsr
3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.994
sptssa
Serine palmitoyltransferase, small subunit A.
    
 0.954
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
  
0.919
LOC103460525
Serine palmitoyltransferase, long chain base subunit 2a.
  
0.918
LOC103457821
Serine palmitoyltransferase, long chain base subunit 2b.
  
0.918
ism1
Isthmin 1.
 
 
 0.904
LOC103460663
AMOP domain-containing protein.
   
 0.884
ism2
Isthmin 2b.
 
 
 0.884
sptssb
Serine palmitoyltransferase, small subunit B.
    
 0.873
LOC103467776
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.868
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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