STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lrch4Leucine-rich repeats and calponin homology (CH) domain containing 4. (269 aa)    
Predicted Functional Partners:
ENSPREP00000006462
Calponin-homology (CH) domain-containing protein.
 
      0.870
ENSPREP00000031331
Calponin-homology (CH) domain-containing protein.
 
      0.761
ENSPREP00000032341
Calponin-homology (CH) domain-containing protein.
 
      0.603
LOC103467543
Fibromodulin b.
  
     0.527
LOC103459210
Decorin; May affect the rate of fibrils formation.
  
     0.523
LOC103459205
Keratocan.
  
     0.514
prelp
Proline/arginine-rich end leucine-rich repeat protein.
  
     0.510
acap1
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1.
   
  
 0.502
Chadl
Chondroadherin-like b.
  
     0.502
lgr4
Leucine-rich repeat containing G protein-coupled receptor 4.
  
 
  0.497
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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