STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467671Uncharacterized protein. (1179 aa)    
Predicted Functional Partners:
cntnap1
Contactin associated protein 1.
   
 0.965
CNTN1
Contactin 1.
   
0.945
cntn1
Contactin 1b.
   
0.945
nfasc
Neurofascin homolog (chicken) a.
  
  
 
0.901
gldn
Gliomedin.
      
 0.757
Otog
Uncharacterized protein.
    
 0.612
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.583
fam151b
Family with sequence similarity 151 member B.
   
 
 0.562
LOC103458474
Otolith matrix protein.
   
 
 0.556
ptpre
Receptor-type tyrosine-protein phosphatase.
    
 0.555
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.