STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snphSyntaphilin b. (856 aa)    
Predicted Functional Partners:
tmem82
Transmembrane protein 82.
      
 0.729
ENSPREP00000010512
Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.698
LOC103476430
Trafficking protein, kinesin binding 2.
      
 0.620
ntan1
Uncharacterized protein.
      
 0.616
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
  
 0.566
mff
Mitochondrial fission factor.
      
 0.530
cplx4
Complexin 4a.
      
 0.528
synj1
Synaptojanin 1.
      
 0.492
LOC103464492
Si:dkey-183j2.10; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
   
  
 0.488
LOC103466963
Si:ch211-251b21.1; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
   
  
 0.488
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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