STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xbp1X-box binding protein 1. (385 aa)    
Predicted Functional Partners:
atf6
Activating transcription factor 6.
    
 0.988
ddit3
DNA-damage-inducible transcript 3.
   
 0.976
ENSPREP00000000500
Uncharacterized protein.
    
 0.972
ern1
Endoplasmic reticulum to nucleus signaling 1.
    
 0.972
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
 0.935
atf6b
BZIP domain-containing protein.
    
 0.913
edem1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
   
 0.909
LOC103477731
Activating transcription factor 4a.
   
 
 0.885
dnajc3
DnaJ (Hsp40) homolog, subfamily C, member 3a.
   
 
 0.817
rtcb
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
      
 0.801
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.