STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc57Leucine rich repeat containing 57. (238 aa)    
Predicted Functional Partners:
zfyve19
Zinc finger, FYVE domain containing 19.
    
 0.678
ENSPREP00000007467
Small EDRK-rich factor 2.
      
 0.635
dnajc17
DnaJ (Hsp40) homolog, subfamily C, member 17.
   
  
 0.601
ivd
Isovaleryl-CoA dehydrogenase.
      
 0.597
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 
 0.579
ENSPREP00000019348
Uncharacterized protein.
    
 0.521
ENSPREP00000019381
Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.521
LOC103459210
Decorin; May affect the rate of fibrils formation.
  
     0.514
chad
Chondroadherin.
  
     0.504
LOC103459205
Keratocan.
  
    0.502
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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