STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000006589PDZ domain-containing protein. (194 aa)    
Predicted Functional Partners:
mpp5
Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.
    
  0.913
LOC103460864
Uncharacterized protein; Belongs to the MAGUK family.
    
  0.913
LOC103479884
Rho/rac guanine nucleotide exchange factor (GEF) 18a.
   
  0.906
arhgef18
Rho/rac guanine nucleotide exchange factor (GEF) 18b.
   
  0.906
tjp3
Tight junction protein 3; Belongs to the MAGUK family.
    
 0.902
LOC103479614
Angiomotin like 2b.
    
  0.901
amotl2
Angiomotin like 2a.
    
  0.901
ENSPREP00000024586
Angiomotin.
    
  0.901
PARD3
Par-3 family cell polarity regulator.
     
 
0.900
pard3
Par-3 family cell polarity regulator alpha, b.
     
 
0.900
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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