STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103475984Uncharacterized protein. (462 aa)    
Predicted Functional Partners:
LOC103470120
SET and MYND domain containing 1b.
   
  0.531
lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
    
 0.495
LOC103476852
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
    
 0.495
LOC103460338
Spalt-like transcription factor 3b.
      
 0.494
tbc1d31
TBC1 domain family, member 31.
    
 0.477
dcp1b
Decapping mRNA 1B.
    
 
 0.469
zhx3
Zinc fingers and homeoboxes 3.
    
 
 0.456
rbm44
RRM domain-containing protein.
  
     0.419
LOC103470404
Cardiomyopathy associated 5.
    
 0.410
polr2j
Polymerase (RNA) II (DNA directed) polypeptide J.
    
 0.405
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.