STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103472929Transporter associated with antigen processing, subunit type a. (711 aa)    
Predicted Functional Partners:
ENSPREP00000003577
TAP binding protein (tapasin), tandem duplicate 2.
   
 0.967
LOC103479782
Calreticulin.
   
 0.937
LOC103472572
Protein disulfide-isomerase.
   
  0.921
LOC103481747
Transporter associated with antigen processing, subunit type t, teleost specific.
  
  
 
0.904
LOC103460927
Transporter associated with antigen processing, subunit type a.
  
  
 
0.900
ENSPREP00000010481
ABC transmembrane type-1 domain-containing protein.
 
 
 
 0.721
LOC103460924
Proteasome subunit beta 12.
 
 
 0.642
LOC103472926
Proteasome subunit beta 12.
 
 
 0.641
tap1
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
  
 
0.604
Katnal2
Katanin p60 subunit A-like 2.
  
 0.569
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.