STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmnb1Lamin B1; Belongs to the intermediate filament family. (584 aa)    
Predicted Functional Partners:
casp6
Caspase 6, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
   
 0.959
LOC103463689
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.902
LOC103463688
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.902
LOC103460719
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.902
LOC103460710
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
    
 0.902
banf1
Barrier to autointegration factor 1.
   
 0.737
LOC103477399
Uncharacterized protein.
   
 0.737
lemd3
LEM domain containing 3.
   
 0.690
hmga2
Uncharacterized protein.
    
 0.649
sun2
SUN domain-containing protein.
    
 0.623
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.