STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103459282ELKS/RAB6-interacting/CAST family member 1. (1157 aa)    
Predicted Functional Partners:
LOC103472577
Uncharacterized protein.
    
 
 0.793
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 
 0.793
dcp1b
Decapping mRNA 1B.
    
 
 0.684
yeats4
YEATS domain containing 4.
    
 
 0.684
cpsf6
Cleavage and polyadenylation specific factor 6.
      
 0.636
rims1
Regulating synaptic membrane exocytosis 1a.
    
 
 0.454
LOC103472178
Regulating synaptic membrane exocytosis 3.
    
 
 0.454
CACNA2D4
Calcium voltage-gated channel auxiliary subunit alpha2delta 4.
      
 0.440
ENSPREP00000005740
PDZ domain-containing protein.
    
 
 0.409
ENSPREP00000005821
C2 domain-containing protein.
    
 
 0.409
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.