STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103459282ELKS/RAB6-interacting/CAST family member 1. (1157 aa)    
Predicted Functional Partners:
LOC103472577
Uncharacterized protein.
   
 
 0.893
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.893
kiaa0930
Zgc:172139.
    
 
 0.644
rims1
Regulating synaptic membrane exocytosis 1a.
   
 
 0.634
LOC103472178
Regulating synaptic membrane exocytosis 3.
   
 
 0.634
SYDE2
Synapse defective Rho GTPase homolog 2.
    
 
 0.629
SYDE1
Synapse defective Rho GTPase homolog 1.
    
 
 0.622
ppfia4
PTPRF interacting protein alpha 4.
   
 
 0.585
LOC103468986
PTPRF interacting protein alpha 3.
   
 
 0.585
LOC103463013
PTPRF interacting protein alpha 1.
   
 
 0.585
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.