STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466925GATA binding protein 5. (372 aa)    
Predicted Functional Partners:
nkx2-5
NK2 homeobox 5.
   
 0.937
zfpm2
Zinc finger protein, FOG family member 2a.
    
 0.897
tbx20
T-box transcription factor 20.
   
 0.810
mixl1
Mix paired-like homeobox.
     
 0.774
LOC103456940
SRY-box transcription factor 32.
    
 0.760
zfpm1
Zinc finger protein, FOG family member 1.
   
 0.735
foxa2
Forkhead box A2.
   
 0.720
hand2
Heart and neural crest derivatives expressed 2.
   
 0.686
foxa1
Fork-head domain-containing protein.
   
 0.685
lmcd1
LIM and cysteine-rich domains 1.
    
 0.669
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.