STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itga4Integrin alpha 4; Belongs to the integrin alpha chain family. (786 aa)    
Predicted Functional Partners:
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.961
vcam1
Vascular cell adhesion molecule 1b.
   
 0.960
jam2
Junctional adhesion molecule 2a.
     
 0.957
LOC103460487
Fibronectin 1a.
    
 0.943
LOC103482508
Integrin beta.
   
 0.911
LOC103479472
Integrin beta; Belongs to the integrin beta chain family.
   
 0.911
LOC103480580
Junctional adhesion molecule 2b.
     
  0.902
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.901
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.873
pxn
Paxillin b.
    
 0.862
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.