STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103461278Uncharacterized protein. (240 aa)    
Predicted Functional Partners:
LOC103459663
Uncharacterized protein.
 
     0.916
rmnd5b
Required for meiotic nuclear division 5 homolog B.
   
 
 0.682
LOC103467734
Uncharacterized protein.
    
 
 0.666
gid8
GID complex subunit 8 homolog b (S. cerevisiae).
    
 
 0.666
armc8
Armadillo repeat containing 8.
    
 
 0.579
wdr26
WD repeat domain 26b.
    
 
 0.536
LOC103462700
SIN3 transcription regulator family member Ab.
   
 
 0.522
sin3a
SIN3 transcription regulator family member Aa.
   
 
 0.522
sin3b
SIN3 transcription regulator family member B.
   
 
 0.522
ENSPREP00000032744
Retinoblastoma 1.
   
 
 0.514
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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