STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DHX15DEAH-box helicase 15. (763 aa)    
Predicted Functional Partners:
rbm17
RNA binding motif protein 17.
   
 0.999
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.998
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.998
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.997
sf3b3
Splicing factor 3b, subunit 3.
   
 0.995
phf5a
PHD finger protein 5A.
   
 0.994
sf3b1
Splicing factor 3b, subunit 1.
   
 0.993
sf3a1
Splicing factor 3a, subunit 1.
   
 0.992
sf3a3
Splicing factor 3a, subunit 3.
   
 0.990
sf3a2
Splicing factor 3a, subunit 2.
    
 0.990
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.