STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fignl1Fidgetin-like 1; Belongs to the AAA ATPase family. (626 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.960
ist1
IST1 factor associated with ESCRT-III.
    
 0.819
chmp3
Charged multivesicular body protein 3.
   
 0.771
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.729
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 0.687
FAAP100
FA core complex associated protein 100.
   
 0.687
yod1
YOD1 deubiquitinase.
   
 0.685
ubxn1
UBX domain protein 1.
   
 0.668
chmp2a
Charged multivesicular body protein 2A.
   
 0.643
chmp7
Charged multivesicular body protein 7.
   
 
 0.642
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.