STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fignl1Fidgetin-like 1; Belongs to the AAA ATPase family. (626 aa)    
Predicted Functional Partners:
ist1
IST1 factor associated with ESCRT-III.
    
 0.918
clg4h1orf112
Si:dkey-97o5.1.
   
 0.869
ubxn7
UBX domain protein 7.
   
 0.801
SPIDR
Scaffold protein involved in DNA repair.
    
 0.780
rad51
RAD51 recombinase.
  
 0.749
ENSPREP00000014094
NDK domain-containing protein.
   
 0.721
ENSPREP00000027150
Uncharacterized protein.
    
 0.699
chmp7
Charged multivesicular body protein 7.
   
 
 0.684
dmc1
Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily.
   
 0.658
chmp2a
Charged multivesicular body protein 2A.
    
 0.648
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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