STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
frmd4bFERM domain containing 4Bb. (986 aa)    
Predicted Functional Partners:
sparc
Secreted protein, acidic, cysteine-rich (osteonectin).
      
 0.780
LOC103467660
Fork-head domain-containing protein.
      
 0.758
AANAT
Arylalkylamine N-acetyltransferase 1.
      
 0.726
mdfic
MyoD family inhibitor domain containing.
    
 
 0.679
foxp1
Forkhead box P1b.
      
 0.629
ENSPREP00000006896
2-epi-5-epi-valiolone synthase.
      
 0.605
opn3
Opsin 3.
      
 0.600
LOC103476708
SPARC-like 2.
      
 0.594
ddb2
Damage-specific DNA binding protein 2.
    
 
 0.523
LOC103479743
Cytohesin 4b.
    
 
 0.518
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.