STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VSIG10Uncharacterized protein. (532 aa)    
Predicted Functional Partners:
lrrc73
Leucine rich repeat containing 73.
      
 0.781
ankrd13d
Ankyrin repeat domain 13 family, member D.
      
 0.758
tepsin
TEPSIN adaptor related protein complex 4 accessory protein.
      
 0.709
ttc17
Tetratricopeptide repeat domain 17.
      
 0.691
polr3d
Polymerase (RNA) III (DNA directed) polypeptide D.
      
 0.605
nprl2
NPR2 like, GATOR1 complex subunit.
      
 0.590
St3gal5
ST3 beta-galactoside alpha-2,3-sialyltransferase 5; Belongs to the glycosyltransferase 29 family.
      
 0.580
shq1
SHQ1, H/ACA ribonucleoprotein assembly factor.
      
 0.579
Clg12h9orf16
Expressed sequence BC139872.
   
  
 0.561
mthfs
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
      
 0.535
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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