STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tm2d1TM2 domain containing 1. (216 aa)    
Predicted Functional Partners:
tm2d2
TM2 domain containing 2.
   
  
 0.924
c2cd2
C2 calcium dependent domain containing 2.
      
 0.784
trdmt1
tRNA aspartic acid methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
      
 0.761
nhlrc2
NHL repeat containing 2.
      
 0.670
ccdc86
Si:ch211-217k17.7.
      
 0.662
fbxo4
F-box protein 4.
   
  
 0.661
lamtor3
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 3.
   
  
 0.609
hectd2
HECT domain containing 2.
      
 0.600
stx6
Syntaxin 6; Belongs to the syntaxin family.
      
 0.594
stx10
Syntaxin 10.
      
 0.592
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.