STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103457498Mesogenin 1. (144 aa)    
Predicted Functional Partners:
ENSPREP00000034149
Uncharacterized protein.
   
 0.692
ENSPREP00000009645
Uncharacterized protein.
   
 0.620
LOC103469783
T-box transcription factor 16.
   
 0.620
mib2
Mindbomb E3 ubiquitin protein ligase 2.
      
 0.476
ENSPREP00000000775
Uncharacterized protein.
      
 0.473
LOC103478959
YME1-like 1b.
      
 0.473
LOC103463652
Transcription factor 3b.
   
 0.461
LOC103466449
BHLH domain-containing protein.
   
 0.461
TCF4
Transcription factor 4.
   
 0.461
ENSPREP00000024411
Uncharacterized protein.
   
 0.461
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.