Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr54WD repeat domain 54. (355 aa)    
Predicted Functional Partners:
OSCP1
Organic solute carrier partner 1.
   
   0.902
LOC103473070
Organic solute carrier partner 1a.
   
   0.902
wdr53
WD repeat domain 53.
      
 0.754
cd99l2
CD99 molecule-like 2.
      
 0.706
tmem104
Transmembrane protein 104.
      
 0.660
LOC103471087
Uncharacterized protein.
      
 0.623
dqx1
DEAQ box RNA-dependent ATPase 1.
      
 0.597
nat9
N-acetyltransferase 9 (GCN5-related, putative).
      
 0.595
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
      
 0.585
mrpl53
Mitochondrial ribosomal protein L53.
      
 0.571
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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