LOC103475987 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103475987

Embryonal Fyn-associated substrate. (970 aa)

Predicted Functional Partners:

mysm1

0.761

ENSPREP00000015831

0.696

ENSPREP00000015870

0.696

ENSPREP00000015917

0.696

itsn2

0.696

LOC103473427

0.693

actl6a

0.684

dctn2

0.682

actr8

0.669

arpc3

0.667

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000015831	ENSPREP00000015870	ENSPREP00000015831	ENSPREP00000015870	Uncharacterized protein.	Uncharacterized protein.	0.995
ENSPREP00000015831	ENSPREP00000015917	ENSPREP00000015831	ENSPREP00000015917	Uncharacterized protein.	EH domain-containing protein.	0.952
ENSPREP00000015831	LOC103475987	ENSPREP00000015831	ENSPREP00000006919	Uncharacterized protein.	Embryonal Fyn-associated substrate.	0.696
ENSPREP00000015831	actl6a	ENSPREP00000015831	ENSPREP00000022295	Uncharacterized protein.	Actin-like 6A; Belongs to the actin family.	0.724
ENSPREP00000015831	actr8	ENSPREP00000015831	ENSPREP00000033984	Uncharacterized protein.	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.	0.657
ENSPREP00000015831	itsn2	ENSPREP00000015831	ENSPREP00000017512	Uncharacterized protein.	Intersectin 2a.	0.953
ENSPREP00000015870	ENSPREP00000015831	ENSPREP00000015870	ENSPREP00000015831	Uncharacterized protein.	Uncharacterized protein.	0.995
ENSPREP00000015870	ENSPREP00000015917	ENSPREP00000015870	ENSPREP00000015917	Uncharacterized protein.	EH domain-containing protein.	0.952
ENSPREP00000015870	LOC103475987	ENSPREP00000015870	ENSPREP00000006919	Uncharacterized protein.	Embryonal Fyn-associated substrate.	0.696
ENSPREP00000015870	actl6a	ENSPREP00000015870	ENSPREP00000022295	Uncharacterized protein.	Actin-like 6A; Belongs to the actin family.	0.724
ENSPREP00000015870	actr8	ENSPREP00000015870	ENSPREP00000033984	Uncharacterized protein.	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.	0.657
ENSPREP00000015870	itsn2	ENSPREP00000015870	ENSPREP00000017512	Uncharacterized protein.	Intersectin 2a.	0.952
ENSPREP00000015917	ENSPREP00000015831	ENSPREP00000015917	ENSPREP00000015831	EH domain-containing protein.	Uncharacterized protein.	0.952
ENSPREP00000015917	ENSPREP00000015870	ENSPREP00000015917	ENSPREP00000015870	EH domain-containing protein.	Uncharacterized protein.	0.952
ENSPREP00000015917	LOC103475987	ENSPREP00000015917	ENSPREP00000006919	EH domain-containing protein.	Embryonal Fyn-associated substrate.	0.696
ENSPREP00000015917	actl6a	ENSPREP00000015917	ENSPREP00000022295	EH domain-containing protein.	Actin-like 6A; Belongs to the actin family.	0.724
ENSPREP00000015917	actr8	ENSPREP00000015917	ENSPREP00000033984	EH domain-containing protein.	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.	0.657
ENSPREP00000015917	itsn2	ENSPREP00000015917	ENSPREP00000017512	EH domain-containing protein.	Intersectin 2a.	0.952
LOC103473427	LOC103475987	ENSPREP00000001069	ENSPREP00000006919	Rap guanine nucleotide exchange factor (GEF) 1b.	Embryonal Fyn-associated substrate.	0.693
LOC103475987	ENSPREP00000015831	ENSPREP00000006919	ENSPREP00000015831	Embryonal Fyn-associated substrate.	Uncharacterized protein.	0.696