STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
focadFocadhesin. (1594 aa)    
Predicted Functional Partners:
aven
Apoptosis, caspase activation inhibitor.
    
 
 0.949
anapc15
Anaphase promoting complex subunit 15.
      
 0.595
mthfs
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
      
 0.591
tmem209
Transmembrane protein 209.
      
 0.569
LOC103474422
Sodium channel, voltage-gated, type II, beta.
    
   0.563
pcnp
PEST proteolytic signal containing nuclear protein.
      
 0.532
exosc4
Exosome component 4.
    
 
 0.530
exosc6
Exosome component 6.
    
 
 0.530
exosc5
Exosome component 5.
    
 
 0.527
VSIG10
Uncharacterized protein.
      
 0.516
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.