LOC103482153 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103482153

Si:ch211-131k2.3. (173 aa)

Predicted Functional Partners:

aarsd1

0.941

tbcb

0.896

ppp5c

0.892

Ppig

0.856

ppid

0.856

nktr

0.856

mvd

0.818

trap1

0.817

hsp90ab1

0.817

LOC103457917

0.817

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103457917	LOC103482153	ENSPREP00000020946	ENSPREP00000006926	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Si:ch211-131k2.3.	0.817
LOC103457917	Ppig	ENSPREP00000020946	ENSPREP00000004884	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.817
LOC103457917	hsp90ab1	ENSPREP00000020946	ENSPREP00000012481	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.948
LOC103457917	nktr	ENSPREP00000020946	ENSPREP00000030666	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Natural killer cell triggering receptor.	0.817
LOC103457917	ppid	ENSPREP00000020946	ENSPREP00000011612	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Peptidylprolyl isomerase D.	0.932
LOC103457917	ppp5c	ENSPREP00000020946	ENSPREP00000027168	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	Serine/threonine-protein phosphatase.	0.930
LOC103482153	LOC103457917	ENSPREP00000006926	ENSPREP00000020946	Si:ch211-131k2.3.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.817
LOC103482153	Ppig	ENSPREP00000006926	ENSPREP00000004884	Si:ch211-131k2.3.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.856
LOC103482153	aarsd1	ENSPREP00000006926	ENSPREP00000007046	Si:ch211-131k2.3.	Alanyl-tRNA synthetase domain containing 1.	0.941
LOC103482153	hsp90ab1	ENSPREP00000006926	ENSPREP00000012481	Si:ch211-131k2.3.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.817
LOC103482153	mvd	ENSPREP00000006926	ENSPREP00000003399	Si:ch211-131k2.3.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.	0.818
LOC103482153	nktr	ENSPREP00000006926	ENSPREP00000030666	Si:ch211-131k2.3.	Natural killer cell triggering receptor.	0.856
LOC103482153	ppid	ENSPREP00000006926	ENSPREP00000011612	Si:ch211-131k2.3.	Peptidylprolyl isomerase D.	0.856
LOC103482153	ppp5c	ENSPREP00000006926	ENSPREP00000027168	Si:ch211-131k2.3.	Serine/threonine-protein phosphatase.	0.892
LOC103482153	tbcb	ENSPREP00000006926	ENSPREP00000000851	Si:ch211-131k2.3.	Tubulin folding cofactor B.	0.896
LOC103482153	trap1	ENSPREP00000006926	ENSPREP00000011122	Si:ch211-131k2.3.	TNF receptor-associated protein 1.	0.817
Ppig	LOC103457917	ENSPREP00000004884	ENSPREP00000020946	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.817
Ppig	LOC103482153	ENSPREP00000004884	ENSPREP00000006926	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	Si:ch211-131k2.3.	0.856
Ppig	hsp90ab1	ENSPREP00000004884	ENSPREP00000012481	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.817
Ppig	ppp5c	ENSPREP00000004884	ENSPREP00000027168	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	Serine/threonine-protein phosphatase.	0.501