STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbksRibokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (312 aa)    
Predicted Functional Partners:
rpia
Ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase).
    
 0.958
TKT
Transketolase.
  
 0.951
LOC103465119
Transketolase a.
  
 0.951
dera
Deoxyribose-phosphate aldolase (putative).
    
 0.951
LOC103467440
Transketolase b.
  
 0.951
pgm2
Phosphoglucomutase 2.
  
 
 0.944
prps1
Phosphoribosyl pyrophosphate synthetase 1B.
  
 0.942
prps2
Pribosyltran_N domain-containing protein.
  
 0.942
LOC103460982
Phosphoribosyl pyrophosphate synthetase 2.
  
 0.942
pgm1
Phosphoglucomutase 1; Belongs to the phosphohexose mutase family.
   
 0.929
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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