LOC103460628 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103460628

Opiate receptor-like 1; Belongs to the G-protein coupled receptor 1 family. (371 aa)

Predicted Functional Partners:

pnoc

0.992

penk

0.936

LOC103472811

0.867

pdyn

0.864

LOC103457768

0.722

LOC103457563

0.707

POMC

0.636

nmu

0.609

LOC103475296

0.590

gal

0.585

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103457563	LOC103457768	ENSPREP00000001337	ENSPREP00000028683	Uncharacterized protein.	Prepronociceptin b.	0.900
LOC103457563	LOC103460628	ENSPREP00000001337	ENSPREP00000006972	Uncharacterized protein.	Opiate receptor-like 1; Belongs to the G-protein coupled receptor 1 family.	0.707
LOC103457563	LOC103472811	ENSPREP00000001337	ENSPREP00000031135	Uncharacterized protein.	Uncharacterized protein.	0.913
LOC103457563	LOC103475296	ENSPREP00000001337	ENSPREP00000004434	Uncharacterized protein.	Somatostatin.	0.646
LOC103457563	gal	ENSPREP00000001337	ENSPREP00000009414	Uncharacterized protein.	Galanin/GMAP prepropeptide.	0.610
LOC103457563	nmu	ENSPREP00000001337	ENSPREP00000029430	Uncharacterized protein.	NMU domain-containing protein.	0.535
LOC103457563	pdyn	ENSPREP00000001337	ENSPREP00000013192	Uncharacterized protein.	Prodynorphin.	0.981
LOC103457563	penk	ENSPREP00000001337	ENSPREP00000017744	Uncharacterized protein.	Uncharacterized protein.	0.959
LOC103457563	pnoc	ENSPREP00000001337	ENSPREP00000006743	Uncharacterized protein.	Prepronociceptin a.	0.958
LOC103457768	LOC103457563	ENSPREP00000028683	ENSPREP00000001337	Prepronociceptin b.	Uncharacterized protein.	0.900
LOC103457768	LOC103460628	ENSPREP00000028683	ENSPREP00000006972	Prepronociceptin b.	Opiate receptor-like 1; Belongs to the G-protein coupled receptor 1 family.	0.722
LOC103457768	LOC103472811	ENSPREP00000028683	ENSPREP00000031135	Prepronociceptin b.	Uncharacterized protein.	0.900
LOC103457768	pdyn	ENSPREP00000028683	ENSPREP00000013192	Prepronociceptin b.	Prodynorphin.	0.922
LOC103457768	penk	ENSPREP00000028683	ENSPREP00000017744	Prepronociceptin b.	Uncharacterized protein.	0.923
LOC103457768	pnoc	ENSPREP00000028683	ENSPREP00000006743	Prepronociceptin b.	Prepronociceptin a.	0.908
LOC103460628	LOC103457563	ENSPREP00000006972	ENSPREP00000001337	Opiate receptor-like 1; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.707
LOC103460628	LOC103457768	ENSPREP00000006972	ENSPREP00000028683	Opiate receptor-like 1; Belongs to the G-protein coupled receptor 1 family.	Prepronociceptin b.	0.722
LOC103460628	LOC103472811	ENSPREP00000006972	ENSPREP00000031135	Opiate receptor-like 1; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.867
LOC103460628	LOC103475296	ENSPREP00000006972	ENSPREP00000004434	Opiate receptor-like 1; Belongs to the G-protein coupled receptor 1 family.	Somatostatin.	0.590
LOC103460628	POMC	ENSPREP00000006972	ENSPREP00000019746	Opiate receptor-like 1; Belongs to the G-protein coupled receptor 1 family.	Proopiomelanocortin.	0.636