STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000006991Uncharacterized protein. (331 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 0.694
fam120c
Family with sequence similarity 120C.
    
 
 0.654
tfap2d
Transcription factor AP-2 delta (activating enhancer binding protein 2 delta).
   
  
 0.651
spata4
Spermatogenesis associated 4.
      
 0.646
agpat5
1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon).
      
 0.636
exosc8
Exosome component 8.
   
 0.633
exosc5
Exosome component 5.
   
 
 0.633
LOC103479027
SERPINE1 mRNA binding protein 1b.
   
 
 0.623
LOC103463733
SERPINE1 mRNA binding protein 1a.
   
 
 0.623
zcchc9
Zinc finger, CCHC domain containing 9.
      
 0.622
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.