nol6 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

nol6

Nucleolar protein 6. (1145 aa)

Predicted Functional Partners:

LOC103473717

0.999

rrp7a

0.999

pdcd11

0.998

bms1

0.998

wdr46

0.998

nop14

0.998

wdr36

0.998

utp4

0.998

utp6

0.997

mphosph10

0.997

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103473717	bms1	ENSPREP00000023564	ENSPREP00000003768	PWP2 small subunit processome component.	BMS1 ribosome biogenesis factor.	0.997
LOC103473717	mphosph10	ENSPREP00000023564	ENSPREP00000033437	PWP2 small subunit processome component.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.995
LOC103473717	nol6	ENSPREP00000023564	ENSPREP00000006993	PWP2 small subunit processome component.	Nucleolar protein 6.	0.999
LOC103473717	nop14	ENSPREP00000023564	ENSPREP00000025074	PWP2 small subunit processome component.	NOP14 nucleolar protein homolog (yeast).	0.996
LOC103473717	pdcd11	ENSPREP00000023564	ENSPREP00000000637	PWP2 small subunit processome component.	Programmed cell death 11.	0.995
LOC103473717	rrp7a	ENSPREP00000023564	ENSPREP00000024400	PWP2 small subunit processome component.	Ribosomal RNA processing 7 homolog A.	0.991
LOC103473717	utp4	ENSPREP00000023564	ENSPREP00000028259	PWP2 small subunit processome component.	UTP4 small subunit processome component.	0.999
LOC103473717	utp6	ENSPREP00000023564	ENSPREP00000019389	PWP2 small subunit processome component.	UTP6 small subunit processome component.	0.999
LOC103473717	wdr36	ENSPREP00000023564	ENSPREP00000025383	PWP2 small subunit processome component.	WD repeat domain 36.	0.999
LOC103473717	wdr46	ENSPREP00000023564	ENSPREP00000024683	PWP2 small subunit processome component.	WD repeat domain 46.	0.997
bms1	LOC103473717	ENSPREP00000003768	ENSPREP00000023564	BMS1 ribosome biogenesis factor.	PWP2 small subunit processome component.	0.997
bms1	mphosph10	ENSPREP00000003768	ENSPREP00000033437	BMS1 ribosome biogenesis factor.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.997
bms1	nol6	ENSPREP00000003768	ENSPREP00000006993	BMS1 ribosome biogenesis factor.	Nucleolar protein 6.	0.998
bms1	nop14	ENSPREP00000003768	ENSPREP00000025074	BMS1 ribosome biogenesis factor.	NOP14 nucleolar protein homolog (yeast).	0.998
bms1	pdcd11	ENSPREP00000003768	ENSPREP00000000637	BMS1 ribosome biogenesis factor.	Programmed cell death 11.	0.996
bms1	rrp7a	ENSPREP00000003768	ENSPREP00000024400	BMS1 ribosome biogenesis factor.	Ribosomal RNA processing 7 homolog A.	0.992
bms1	utp4	ENSPREP00000003768	ENSPREP00000028259	BMS1 ribosome biogenesis factor.	UTP4 small subunit processome component.	0.998
bms1	utp6	ENSPREP00000003768	ENSPREP00000019389	BMS1 ribosome biogenesis factor.	UTP6 small subunit processome component.	0.992
bms1	wdr36	ENSPREP00000003768	ENSPREP00000025383	BMS1 ribosome biogenesis factor.	WD repeat domain 36.	0.998
bms1	wdr46	ENSPREP00000003768	ENSPREP00000024683	BMS1 ribosome biogenesis factor.	WD repeat domain 46.	0.996