STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itga6Integrin, alpha 6a; Belongs to the integrin alpha chain family. (1081 aa)    
Predicted Functional Partners:
itgb4
Integrin, beta 4.
   
 0.979
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.968
LOC103460961
Integrin beta.
   
 0.953
LOC103479330
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
  
  
 
0.904
LOC103479472
Integrin beta; Belongs to the integrin beta chain family.
   
 0.900
LOC103482508
Integrin beta.
   
 0.890
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.856
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.838
LAMB1
Laminin, beta 1a.
    
 0.828
Lamb2
Laminin, beta 2 (laminin S).
    
 0.828
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.