STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103475990Ajuba LIM protein. (658 aa)    
Predicted Functional Partners:
LOC103478463
Uncharacterized protein.
    
   0.792
lats2
Large tumor suppressor kinase 2.
    
 
 0.782
lats1
Large tumor suppressor kinase 1.
    
 
 0.782
bora
Bora aurora kinase A activator.
   
 
 0.709
LOC103479031
Nitric oxide synthase 1 (neuronal) adaptor protein b.
    
 
 0.674
Clg4h1orf226
Uncharacterized protein.
    
 
 0.674
nos1ap
PID domain-containing protein.
    
 
 0.674
LOC103473406
Si:dkey-34e4.1.
    
 
 0.674
sqstm1
Sequestosome 1.
    
   0.655
haus3
HAUS augmin-like complex, subunit 3.
   
 0.628
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.