STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aarsd1Alanyl-tRNA synthetase domain containing 1. (412 aa)    
Predicted Functional Partners:
LOC103482153
Si:ch211-131k2.3.
 
 
    0.941
trim45
Tripartite motif containing 45.
    
   0.790
arid4b
Translocase of outer mitochondrial membrane 20.
    
   0.661
ppp1r14b
Protein phosphatase 1, regulatory (inhibitor) subunit 14Bb.
    
   0.639
tbcb
Tubulin folding cofactor B.
   
   0.634
mvd
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
    
   0.569
Arid4a
Tudor domain-containing protein.
    
   0.565
tat
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
   
   0.503
LOC103475923
Uncharacterized protein.
    
   0.502
eprs1
Glutamyl-prolyl-tRNA synthetase.
     
 0.478
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.