STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)    
Predicted Functional Partners:
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.957
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.948
wdr82
WD repeat domain 82.
   
 0.939
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.934
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.929
CPSF3
Cleavage and polyadenylation specific factor 3.
   
 0.915
LOC103457156
Cleavage and polyadenylation specific factor 3.
   
 0.915
ppp1cb
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.907
LOC103468963
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.907
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.907
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (22%) [HD]