STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efcab1Uncharacterized protein. (232 aa)    
Predicted Functional Partners:
LOC103460395
Uncharacterized protein.
    
 
 0.836
armc3
Armadillo repeat containing 3.
   
 
 0.825
armc4
Armadillo repeat containing 4.
  
 
 0.818
ttc25
Tetratricopeptide repeat domain 25.
   
 0.802
efhc2
EF-hand domain (C-terminal) containing 2.
   
 
 0.746
LOC103464463
Coiled-coil domain containing 114.
    
 
 0.727
ccdc151
Uncharacterized protein.
    
 0.705
iqub
IQ motif and ubiquitin domain containing.
   
 0.692
efhc1
EF-hand domain (C-terminal) containing 1.
   
 
 0.688
tekt3
Tektin 3.
   
 
 0.674
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.