STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc96DUF4201 domain-containing protein. (451 aa)    
Predicted Functional Partners:
Arid4a
Tudor domain-containing protein.
    
 0.853
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.853
ccdc92
Coiled-coil domain containing 92.
      
 0.727
ccdc149
Coiled-coil domain containing 149a.
      
 0.715
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.683
LOC103461037
RAN binding protein 2.
   
 0.629
LOC103462700
SIN3 transcription regulator family member Ab.
   
 0.620
sin3a
SIN3 transcription regulator family member Aa.
   
 0.620
sin3b
SIN3 transcription regulator family member B.
   
 0.620
wdr73
WD repeat domain 73.
   
 0.606
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.