STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc96DUF4201 domain-containing protein. (451 aa)    
Predicted Functional Partners:
LOC103460395
Uncharacterized protein.
   
 
 0.958
efcab1
Uncharacterized protein.
    
 0.941
iqub
IQ motif and ubiquitin domain containing.
   
 
 0.926
clg10h4orf47
Zgc:153146.
    
 0.913
LOC103466357
DUF4201 domain-containing protein.
   
 
 0.910
ENSPREP00000026151
Uncharacterized protein.
    
 
 0.909
cfap20
Cilia and flagella associated protein 20.
    
 
 0.908
drc7
Uncharacterized protein.
    
 
 0.905
dnali1
Dynein, axonemal, light intermediate chain 1.
   
 
 0.894
dnai2
Dynein, axonemal, intermediate chain 2b.
   
 0.894
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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