STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103461301Histone H3; Belongs to the histone H3 family. (90 aa)    
Predicted Functional Partners:
LOC103475867
Lysine (K)-specific demethylase 6B, b.
   
 0.898
LOC103475798
Lysine (K)-specific demethylase 6A, like.
   
 0.898
kdm6b
Lysine (K)-specific demethylase 6B, a.
   
 0.898
kdm6a
Lysine (K)-specific demethylase 6A.
   
 0.898
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.849
rbbp4
Retinoblastoma binding protein 4.
   
 0.816
Arid4a
Tudor domain-containing protein.
   
 0.813
arid4b
Translocase of outer mitochondrial membrane 20.
   
 0.813
suv39h1
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
   
 0.809
eed
Embryonic ectoderm development.
   
 0.808
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.