STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466685Calumenin b. (315 aa)    
Predicted Functional Partners:
fkbp10
Peptidylprolyl isomerase.
   
 
 0.518
LOC103469251
FAM20C golgi associated secretory pathway kinase a.
    
  0.496
LOC103468199
Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
   
 
 0.484
palld
Palladin, cytoskeletal associated protein.
    
 
 0.478
ltbp2
Uncharacterized protein.
   
  
 0.474
PTGIS
Prostaglandin I2 synthase; Belongs to the cytochrome P450 family.
      
 0.473
Tnpo3
Transportin 3.
      
 0.470
ENSPREP00000029316
Transportin 3.
      
 0.470
LOC103479782
Calreticulin.
   
 
 0.458
LOC103464072
Calreticulin.
   
 
 0.458
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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