pcare protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-expression

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[Homology]

Score

pcare

Uncharacterized protein. (1131 aa)

Predicted Functional Partners:

LOC103457654

0.579

arsg

0.576

ENSPREP00000015555

0.524

cerkl

0.517

znf513

0.503

fam83h

0.476

ABI1

0.475

ENSPREP00000003699

0.475

ENSPREP00000003717

0.475

rpgr

0.470

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABI1	ENSPREP00000003717	ENSPREP00000001513	ENSPREP00000003717	Abl-interactor 1a.	Uncharacterized protein.	0.540
ABI1	pcare	ENSPREP00000001513	ENSPREP00000007139	Abl-interactor 1a.	Uncharacterized protein.	0.475
ENSPREP00000003699	pcare	ENSPREP00000003699	ENSPREP00000007139	SH3 domain-containing protein.	Uncharacterized protein.	0.475
ENSPREP00000003717	ABI1	ENSPREP00000003717	ENSPREP00000001513	Uncharacterized protein.	Abl-interactor 1a.	0.540
ENSPREP00000003717	pcare	ENSPREP00000003717	ENSPREP00000007139	Uncharacterized protein.	Uncharacterized protein.	0.475
ENSPREP00000015555	cerkl	ENSPREP00000015555	ENSPREP00000006450	Uncharacterized protein.	Ceramide kinase-like.	0.596
ENSPREP00000015555	pcare	ENSPREP00000015555	ENSPREP00000007139	Uncharacterized protein.	Uncharacterized protein.	0.524
ENSPREP00000015555	rpgr	ENSPREP00000015555	ENSPREP00000015095	Uncharacterized protein.	Uncharacterized protein.	0.499
ENSPREP00000015555	znf513	ENSPREP00000015555	ENSPREP00000028234	Uncharacterized protein.	Zinc finger protein 513a.	0.602
LOC103457654	cerkl	ENSPREP00000016092	ENSPREP00000006450	Lebercilin LCA5.	Ceramide kinase-like.	0.484
LOC103457654	pcare	ENSPREP00000016092	ENSPREP00000007139	Lebercilin LCA5.	Uncharacterized protein.	0.579
arsg	pcare	ENSPREP00000029063	ENSPREP00000007139	Arylsulfatase G.	Uncharacterized protein.	0.576
cerkl	ENSPREP00000015555	ENSPREP00000006450	ENSPREP00000015555	Ceramide kinase-like.	Uncharacterized protein.	0.596
cerkl	LOC103457654	ENSPREP00000006450	ENSPREP00000016092	Ceramide kinase-like.	Lebercilin LCA5.	0.484
cerkl	pcare	ENSPREP00000006450	ENSPREP00000007139	Ceramide kinase-like.	Uncharacterized protein.	0.517
cerkl	rpgr	ENSPREP00000006450	ENSPREP00000015095	Ceramide kinase-like.	Uncharacterized protein.	0.641
cerkl	znf513	ENSPREP00000006450	ENSPREP00000028234	Ceramide kinase-like.	Zinc finger protein 513a.	0.602
fam83h	pcare	ENSPREP00000010600	ENSPREP00000007139	Family with sequence similarity 83 member Hb.	Uncharacterized protein.	0.476
pcare	ABI1	ENSPREP00000007139	ENSPREP00000001513	Uncharacterized protein.	Abl-interactor 1a.	0.475
pcare	ENSPREP00000003699	ENSPREP00000007139	ENSPREP00000003699	Uncharacterized protein.	SH3 domain-containing protein.	0.475