STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000007181Uncharacterized protein. (113 aa)    
Predicted Functional Partners:
slc19a1
Solute carrier family 19 member 1.
    
   0.739
sardh
Sarcosine dehydrogenase.
      
 0.670
tekt3
Tektin 3.
      
 0.655
LOC103478158
Protein S100; Belongs to the S-100 family.
      
 0.531
LOC103462557
Stereocilin.
      
 0.503
pdpr
Pyruvate dehydrogenase phosphatase regulatory subunit.
      
 0.428
LOC103478146
Si:dkey-71b5.7.
      
 0.407
ENSPREP00000001027
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
      
 0.405
hspb11
Zgc:158640.
      
 0.405
aatf
Apoptosis antagonizing transcription factor.
      
 0.401
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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