STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr43WD repeat domain 43. (651 aa)    
Predicted Functional Partners:
ENSPREP00000008920
Uncharacterized protein.
   
 0.999
utp4
UTP4 small subunit processome component.
   
 0.999
utp15
UTP15 small subunit processome component.
  
 0.998
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.998
LOC103473717
PWP2 small subunit processome component.
   
 0.998
wdr36
WD repeat domain 36.
   
 0.998
mphosph10
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
   
 0.998
bms1
BMS1 ribosome biogenesis factor.
   
 0.996
rcl1
RNA terminal phosphate cyclase-like 1.
   
 0.996
utp6
UTP6 small subunit processome component.
   
 0.996
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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