STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrp10Low density lipoprotein receptor-related protein 10. (727 aa)    
Predicted Functional Partners:
aplp1
Amyloid beta (A4) precursor-like protein 1.
    
 0.689
ENSPREP00000020277
RBR-type E3 ubiquitin transferase.
      
 0.614
fkrp
Fukutin related protein.
     
 0.603
rbbp5
Retinoblastoma binding protein 5.
      
 0.534
ENSPREP00000015831
Uncharacterized protein.
    
 0.520
ENSPREP00000015870
Uncharacterized protein.
    
 0.520
ENSPREP00000015917
EH domain-containing protein.
    
 0.520
itsn2
Intersectin 2a.
    
 0.520
srd5a3
Steroid 5 alpha-reductase 3.
      
 0.503
manf
Mesencephalic astrocyte-derived neurotrophic factor.
      
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.