STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103462687Cholinergic receptor, nicotinic, alpha 5. (448 aa)    
Predicted Functional Partners:
chrna1
Cholinergic receptor, nicotinic, alpha 1 (muscle).
  
0.685
LOC103465959
Synaptic vesicle glycoprotein 2.
      
 0.647
LOC103467111
Uncharacterized protein.
  
0.625
chrna2
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
  
0.624
LOC103462695
Cholinergic receptor, nicotinic, beta 4 (neuronal).
  
0.567
LOC103462694
Cholinergic receptor, nicotinic, alpha 3.
  
0.566
LOC103464242
Cholinergic receptor, nicotinic, beta 5a.
  
0.525
chrnb2
Cholinergic receptor, nicotinic, beta 2.
  
0.517
LOC103471382
Uncharacterized protein.
  
0.504
chrnb1
Cholinergic receptor, nicotinic, beta 1 (muscle).
  
0.490
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.