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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478912Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family. (2628 aa)    
Predicted Functional Partners:
ddb2
Damage-specific DNA binding protein 2.
    
 0.811
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.774
wdr76
WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family.
    
 0.729
LOC103477645
MCL1 apoptosis regulator, BCL2 family member b.
    
 
 0.696
pex10
Peroxisomal biogenesis factor 10.
     
 0.689
LOC103473773
Mothers against decapentaplegic homolog.
   
 0.686
LOC103477474
Mothers against decapentaplegic homolog.
   
 0.686
SMAD4
Mothers against decapentaplegic homolog.
   
 0.686
rps27a
Ribosomal protein S27a.
    
 0.679
zfand4
Zinc finger, AN1-type domain 4.
    
  0.677
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.