STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rab42Si:dkey-34d22.5. (201 aa)    
Predicted Functional Partners:
LOC103459897
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.632
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.598
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.598
LOC103473793
RAB14, member RAS oncogene family.
    
  0.589
LOC103470772
Uncharacterized protein.
    
  0.589
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
  0.564
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
  0.551
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.546
ENSPREP00000015831
Uncharacterized protein.
    
 0.541
ENSPREP00000015870
Uncharacterized protein.
    
 0.541
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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