Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ahdc1AT hook, DNA binding motif, containing 1. (1521 aa)    
Predicted Functional Partners:
scai
Suppressor of cancer cell invasion.
    
 
 0.799
filip1
Filamin A interacting protein 1a.
      
 0.725
jarid2
Jumonji, AT rich interactive domain 2b.
      
 0.624
scpep1
Carboxypeptidase; Belongs to the peptidase S10 family.
      
 0.588
pold2
Polymerase (DNA directed), delta 2, regulatory subunit.
      
 0.551
rcor2
REST corepressor 2.
      
 0.532
patz1
POZ/BTB and AT hook containing zinc finger 1.
      
 0.531
huwe1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
      
 0.520
cdc45
CDC45 cell division cycle 45 homolog (S. cerevisiae).
      
 0.510
adnp
Activity-dependent neuroprotector homeobox b.
   
 
 0.504
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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