STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCMH1Scm polycomb group protein homolog 1. (728 aa)    
Predicted Functional Partners:
PCGF2
Polycomb group ring finger 2.
    
 0.874
ENSPREP00000022294
Bmi1 polycomb ring finger oncogene 1a.
    
 0.874
Phc1
Uncharacterized protein.
    
 0.859
rnf2
Ring finger protein 2.
    
 0.853
RING1
Ring finger protein 1.
    
 0.853
cbx8
Chromobox homolog 8b.
    
 0.848
LOC103469230
Chromobox homolog 8a (Pc class homolog, Drosophila).
    
 0.834
cbx2
Chromobox homolog 2 (Drosophila Pc class).
    
 0.815
cbx6
Chromobox homolog 6a.
    
 0.801
LOC103481889
Chromo domain-containing protein.
    
 0.750
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.