LOC103468100 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103468100

G protein-coupled receptor 37 like 1b. (518 aa)

Predicted Functional Partners:

ipo11

0.719

ENSPREP00000020277

0.718

mpp5

0.715

slc25a16

0.712

LOC103477201

0.709

LOC103470281

0.709

LOC103464982

0.601

LOC103459863

0.582

GRIN3A

0.553

lum

0.549

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000020277	LOC103468100	ENSPREP00000020277	ENSPREP00000007286	RBR-type E3 ubiquitin transferase.	G protein-coupled receptor 37 like 1b.	0.718
GRIN3A	LOC103468100	ENSPREP00000007801	ENSPREP00000007286	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	G protein-coupled receptor 37 like 1b.	0.553
GRIN3A	lum	ENSPREP00000007801	ENSPREP00000002403	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Lumican.	0.926
LOC103459863	LOC103468100	ENSPREP00000000116	ENSPREP00000007286	Prominin 1 b.	G protein-coupled receptor 37 like 1b.	0.582
LOC103459863	ipo11	ENSPREP00000000116	ENSPREP00000024571	Prominin 1 b.	Importin 11.	0.580
LOC103459863	mpp5	ENSPREP00000000116	ENSPREP00000012779	Prominin 1 b.	Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.	0.580
LOC103459863	slc25a16	ENSPREP00000000116	ENSPREP00000028119	Prominin 1 b.	Solute carrier family 25 member 16; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.580
LOC103464982	LOC103468100	ENSPREP00000031513	ENSPREP00000007286	Family with sequence similarity 219 member Aa.	G protein-coupled receptor 37 like 1b.	0.601
LOC103468100	ENSPREP00000020277	ENSPREP00000007286	ENSPREP00000020277	G protein-coupled receptor 37 like 1b.	RBR-type E3 ubiquitin transferase.	0.718
LOC103468100	GRIN3A	ENSPREP00000007286	ENSPREP00000007801	G protein-coupled receptor 37 like 1b.	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.553
LOC103468100	LOC103459863	ENSPREP00000007286	ENSPREP00000000116	G protein-coupled receptor 37 like 1b.	Prominin 1 b.	0.582
LOC103468100	LOC103464982	ENSPREP00000007286	ENSPREP00000031513	G protein-coupled receptor 37 like 1b.	Family with sequence similarity 219 member Aa.	0.601
LOC103468100	LOC103470281	ENSPREP00000007286	ENSPREP00000031820	G protein-coupled receptor 37 like 1b.	Surfactant protein Bb.	0.709
LOC103468100	LOC103477201	ENSPREP00000007286	ENSPREP00000005013	G protein-coupled receptor 37 like 1b.	Prosaposin; Prosaposin: Behaves as a myelinotrophic and neurotrophic factor, these effects are mediated by its G-protein-coupled receptors, GPR37 and GPR37L1, undergoing ligand-mediated internalization followed by ERK phosphorylation signaling.	0.709
LOC103468100	ipo11	ENSPREP00000007286	ENSPREP00000024571	G protein-coupled receptor 37 like 1b.	Importin 11.	0.719
LOC103468100	lum	ENSPREP00000007286	ENSPREP00000002403	G protein-coupled receptor 37 like 1b.	Lumican.	0.549
LOC103468100	mpp5	ENSPREP00000007286	ENSPREP00000012779	G protein-coupled receptor 37 like 1b.	Membrane protein, palmitoylated 5b (MAGUK p55 subfamily member 5); Belongs to the MAGUK family.	0.715
LOC103468100	slc25a16	ENSPREP00000007286	ENSPREP00000028119	G protein-coupled receptor 37 like 1b.	Solute carrier family 25 member 16; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.712
LOC103470281	LOC103468100	ENSPREP00000031820	ENSPREP00000007286	Surfactant protein Bb.	G protein-coupled receptor 37 like 1b.	0.709
LOC103470281	LOC103477201	ENSPREP00000031820	ENSPREP00000005013	Surfactant protein Bb.	Prosaposin; Prosaposin: Behaves as a myelinotrophic and neurotrophic factor, these effects are mediated by its G-protein-coupled receptors, GPR37 and GPR37L1, undergoing ligand-mediated internalization followed by ERK phosphorylation signaling.	0.900