mta3 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mta3

Metastasis associated 1 family, member 3. (699 aa)

Predicted Functional Partners:

LOC103463694

0.876

LOC103479433

0.876

gatad2b

0.876

LOC103472838

0.873

chd3

0.873

chd4

0.873

chd5

0.873

rbbp4

0.870

RBBP7

0.870

LOC103458631

0.865

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103458631	LOC103463694	ENSPREP00000002417	ENSPREP00000010529	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	GATA zinc finger domain containing 2Ab.	0.838
LOC103458631	LOC103472838	ENSPREP00000002417	ENSPREP00000001767	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Chromodomain helicase DNA binding protein 4a.	0.843
LOC103458631	LOC103479433	ENSPREP00000002417	ENSPREP00000026795	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Uncharacterized protein.	0.838
LOC103458631	RBBP7	ENSPREP00000002417	ENSPREP00000032935	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	RB binding protein 7, chromatin remodeling factor.	0.848
LOC103458631	chd3	ENSPREP00000002417	ENSPREP00000016390	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Chromodomain helicase DNA binding protein 3.	0.843
LOC103458631	chd4	ENSPREP00000002417	ENSPREP00000016795	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Uncharacterized protein.	0.843
LOC103458631	chd5	ENSPREP00000002417	ENSPREP00000021169	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Uncharacterized protein.	0.843
LOC103458631	gatad2b	ENSPREP00000002417	ENSPREP00000029793	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	GATA zinc finger domain containing 2B.	0.859
LOC103458631	mta3	ENSPREP00000002417	ENSPREP00000007311	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Metastasis associated 1 family, member 3.	0.865
LOC103458631	rbbp4	ENSPREP00000002417	ENSPREP00000032501	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Retinoblastoma binding protein 4.	0.848
LOC103463694	LOC103458631	ENSPREP00000010529	ENSPREP00000002417	GATA zinc finger domain containing 2Ab.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.838
LOC103463694	LOC103472838	ENSPREP00000010529	ENSPREP00000001767	GATA zinc finger domain containing 2Ab.	Chromodomain helicase DNA binding protein 4a.	0.919
LOC103463694	LOC103479433	ENSPREP00000010529	ENSPREP00000026795	GATA zinc finger domain containing 2Ab.	Uncharacterized protein.	0.902
LOC103463694	RBBP7	ENSPREP00000010529	ENSPREP00000032935	GATA zinc finger domain containing 2Ab.	RB binding protein 7, chromatin remodeling factor.	0.867
LOC103463694	chd3	ENSPREP00000010529	ENSPREP00000016390	GATA zinc finger domain containing 2Ab.	Chromodomain helicase DNA binding protein 3.	0.890
LOC103463694	chd4	ENSPREP00000010529	ENSPREP00000016795	GATA zinc finger domain containing 2Ab.	Uncharacterized protein.	0.889
LOC103463694	chd5	ENSPREP00000010529	ENSPREP00000021169	GATA zinc finger domain containing 2Ab.	Uncharacterized protein.	0.884
LOC103463694	gatad2b	ENSPREP00000010529	ENSPREP00000029793	GATA zinc finger domain containing 2Ab.	GATA zinc finger domain containing 2B.	0.562
LOC103463694	mta3	ENSPREP00000010529	ENSPREP00000007311	GATA zinc finger domain containing 2Ab.	Metastasis associated 1 family, member 3.	0.876
LOC103463694	rbbp4	ENSPREP00000010529	ENSPREP00000032501	GATA zinc finger domain containing 2Ab.	Retinoblastoma binding protein 4.	0.867