STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471097TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (239 aa)    
Predicted Functional Partners:
tnfrsf13b
TACI-CRD2 domain-containing protein.
    
 0.992
tnfsf13b
TNF superfamily member 13b; Belongs to the tumor necrosis factor family.
     
 
0.900
aktip
Akt interacting protein.
    
   0.765
tnfsf11
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
    
 0.675
tnfsf12
TNF superfamily member 12; Belongs to the tumor necrosis factor family.
    
 0.660
LOC103456653
Cystatin domain-containing protein; Belongs to the cystatin family.
    
 
 0.654
LOC103456655
Cystatin domain-containing protein; Belongs to the cystatin family.
    
 
 0.654
LOC103471589
CD40 ligand; Belongs to the tumor necrosis factor family.
     
 0.610
tnfrsf11a
Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.
     
 0.499
fam160a1
Family with sequence similarity 160 member A1a.
    
   0.495
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.