STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103458407Rap guanine nucleotide exchange factor (GEF) 4. (917 aa)    
Predicted Functional Partners:
LOC103467797
Rap guanine nucleotide exchange factor (GEF) 3.
  
 
 
0.981
LOC103479350
Zgc:171558.
  
 
 
0.957
LOC103467749
Uncharacterized protein.
   
 0.912
rap1b
Uncharacterized protein.
   
 0.912
LOC103464617
RAP1A, member of RAS oncogene family b.
   
 0.912
LOC103460789
ATP-binding cassette, sub-family C (CFTR/MRP), member 9.
    
 0.858
abcc8
ATP-binding cassette, sub-family C (CFTR/MRP), member 8.
    
 0.858
LOC103463144
Uncharacterized protein.
   
 0.815
LOC103458440
DIRAS family, GTP-binding RAS-like 1b.
   
 0.815
ENSPREP00000004060
Uncharacterized protein.
   
 0.813
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.