STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103468763Collagen beta(1-O)galactosyltransferase 1. (611 aa)    
Predicted Functional Partners:
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
0.957
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
0.957
LOC103463619
Collagen beta(1-O)galactosyltransferase 2.
  
  
 
0.911
LOC103463461
Uncharacterized protein.
  
  
 
0.901
ogfod2
2-oxoglutarate and iron-dependent oxygenase domain containing 2.
   
 0.500
LOC103461657
Uncharacterized protein.
   
 0.432
ENSPREP00000022184
Uncharacterized protein.
   
 0.432
col6a2
Collagen, type VI, alpha 2.
   
 0.432
LOC103472590
Uncharacterized protein.
    
 0.411
LOC103476785
Uncharacterized protein.
    
 0.411
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.